Irrep generating function to a module (end of ipynb copy-pasting)
Former-commit-id: b98580074f2d00ff5ae2356e08b9ab189cd567ed
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@ -6,3 +6,4 @@ from .qpms_p import *
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from .lattices2d import *
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from .hexpoints import *
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from .tmatrices import *
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@ -783,11 +783,16 @@ def loadWfile(fileName, lMax = None, fatForm = True):
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'freqs_weirdunits' : freqs_weirdunits,
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}
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def processWfiles_sameKs(freqfilenames, destfilename, lMax = None):
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'''Processes translation operator data in different files; each file is supposed to contain one frequency.
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def processWfiles_sameKs(freqfilenames, destfilename, lMax = None, f='npz'):
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'''
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Processes translation operator data in different files; each file is supposed to contain one frequency.
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The Ks in the different files are expected to be exactly the same and in the same order;
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the result is sorted by frequencies and saved to npz file;
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The representation is always "thin", i.e. the elements which are zero due to z-symmetry are skipped'''
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The representation is always "thin", i.e. the elements which are zero due to z-symmetry are skipped
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F is either 'npz' or 'd'
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'npz' creates npz archive, 'd' creates a directory with individual npy files, where the W-matrix data
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are writen using memmap.
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'''
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nparticles = 2 #TODO generalize
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um = 1e-6 # micrometre in SI units
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@ -808,7 +813,17 @@ def processWfiles_sameKs(freqfilenames, destfilename, lMax = None):
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nelem = lMax2nelem(lMax)
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ks_muster = np.array(data[:,3:5], copy=True)
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allWs = np.empty((nfiles, nk_muster, nparticles, nparticles, 2, nelem, nelem,), dtype=complex)
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if f == 'npz':
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allWs = np.empty((nfiles, nk_muster, nparticles, nparticles, 2, nelem, nelem,), dtype=complex)
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elif f == 'd':
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j = os.path.join
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d = destfilename
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try:
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os.mkdir(destfilename)
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except FileExistsError as exc:
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pass
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allWs = np.lib.format.open_memmap(filename=j(d,"Wdata.npy"), dtype=complex, shape=(nfiles, nk_muster, nparticles, nparticles,2,nelem,nelem,),mode='w+')
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else: raise ValueError("f has to be either 'npz' or 'd'")
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k0s = np.empty((nfiles,))
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freqs_weirdunits = np.empty((nfiles,))
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EeVs = np.empty((nfiles,))
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@ -832,12 +847,11 @@ def processWfiles_sameKs(freqfilenames, destfilename, lMax = None):
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k0s[succread] = data[0,2] # TODO check this as well?
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EeVs[succread] = data[0,1]
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succread += 1
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allWs.close()
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freqs = freqs_weirdunits * c / um
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#TODO TODO TODO sort everything by omega
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np.savez(destfilename,
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if f == 'npz':
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np.savez(destfilename,
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lMax = lMax,
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nelem = nelem,
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npart = nparticles,
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@ -850,16 +864,54 @@ def processWfiles_sameKs(freqfilenames, destfilename, lMax = None):
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ks = ks_muster,
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Wdata = allWs[:succread]
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)
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elif f == 'd':
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np.save(j(d,'lMax.npy'), lMax)
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np.save(j(d,'nelem.npy'), nelem)
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np.save(j(d,'npart.npy'), nparticles)
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np.save(j(d,'nfreqs.npy'), succread)
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np.save(j(d,'nk.npy'), nk_muster)
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np.save(j(d,'freqs.npy'), freqs[:succread])
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np.save(j(d,'freqs_weirdunits.npy'), freqs_weirdunits[:succread])
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np.save(j(d,'EeVs_orig.npy'), EeVs[:succread])
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np.save(j(d,'k0s.npy'), k0s[:succread])
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np.save(j(d,'ks.npy'), ks_muster)
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# Wdata already saved
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return
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def loadWfile_processed(fileName, lMax = None, fatForm = True):
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data = np.load(fileName);
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nk = data['nk'][()]
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nfreqs = data['nfreqs'][()]
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nparticles = data['npart'][()]
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Ws = data['Wdata']
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def loadWfile_processed(fileName, lMax = None, fatForm = True, midk_halfwidth = None):
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if os.path.isdir(fileName): # .npy files in a directory
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p = filename
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j = os.path.join
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nk = np.load(j(p,'nk.npy'))[()]
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nfreqs = np.load(j(p,'nfreqs.npy'))[()]
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nparticles = np.load(j(p,'npart.npy'))[()]
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Ws = np.load(j(p,'Wdata.npy'), mode='r')
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ks = np.load(j(p,'ks.npy'))
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freqs = np.load(j(p,'freqs.npy'))
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k0s = np.load(j(p,'k0s.npy'))
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EeVs_orig = np.load(j(p,'EeVs_orig.npy'))
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freqs_weirdunits = np.load(j(p,'freqs_weirdunits.npy'))
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else: # npz file
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data = np.load(fileName, mode='r')
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nk = data['nk'][()]
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nfreqs = data['nfreqs'][()]
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nparticles = data['npart'][()]
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Ws = data['Wdata']
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ks = data['ks']
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freqs = data['freqs']
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k0s = data['k0s']
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EeVs_orig = data['EeVs_orig']
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freqs_weirdunits = data['freqs_weirdunits']
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if midk_halfwidth is not None:
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k_mid_i = nk // 2
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if midk_halfwidth < k_mid_i:
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maxk_i = k_mid_i + midk_halfwidth
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mink_i = k_mid_i - midk_halfwidth
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nk = 2*midk_halfwidth+1
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Ws = Ws[:,mink_i:(maxk_i+1)]
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ks = ks[mink_i:(maxk_i+1)]
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if lMax is not None:
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nelem = lMax2nelem(lMax)
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Ws = Ws[...,:nelem,:nelem]
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@ -880,11 +932,11 @@ def loadWfile_processed(fileName, lMax = None, fatForm = True):
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'npart': nparticles,
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'nfreqs': nfreqs,
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'nk' : nk,
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'freqs': data['freqs'],
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'freqs_weirdunits': data['freqs_weirdunits'],
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'EeVs_orig': data['EeVs_orig'],
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'k0s': data['k0s'],
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'ks': data['ks'],
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'freqs': freqs,
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'freqs_weirdunits': freqs_weirdunits,
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'EeVs_orig': EeVs_orig,
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'k0s': k0s,
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'ks': ks,
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'Ws': Ws,
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}
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@ -0,0 +1,200 @@
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from sympy.combinatorics import Permutation, PermutationGroup
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Permutation.print_cyclic = True
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import cmath
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from cmath import exp, pi
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from math import sqrt
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import numpy as np
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np.set_printoptions(linewidth=200)
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import qpms
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import numbers
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ň = None
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def grouprep_try(tdict, src, im, srcgens, imgens, immultop = None, imcmp = None):
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tdict[src] = im
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for i in range(len(srcgens)):
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new_src = src * srcgens[i]
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new_im = (im * imgens[i]) if (immultop is None) else immultop(im, imgens[i])
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if new_src not in tdict.keys():
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grouprep_try(tdict, new_src, new_im, srcgens, imgens, immultop, imcmp)
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elif ((new_im != tdict[new_src]) if (imcmp is None) else (not imcmp(new_im, tdict[new_src]))): # check consistency
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print(src, ' * ', srcgens[i], ' --> ', new_src)
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print(im)
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print(' * ')
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print(imgens[i])
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print(' --> ')
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print(new_im)
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print(' != ')
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print(tdict[new_src])
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raise ValueError("Homomorphism inconsistency detected")
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return
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# srcgroup is expected to be PermutationGroup and srcgens of the TODO
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# imcmp returns True if two elements of the image group are 'equal', otherwise False
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def generate_grouprep(srcgroup, im_identity, srcgens, imgens, immultop = None, imcmp = None):
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sz = srcgens[0].size
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for g in srcgens:
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if g.size != sz:
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raise ValueError('All the generators must have the same "size"')
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tdict = dict()
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grouprep_try(tdict, Permutation(sz-1), im_identity, srcgens, imgens, immultop = immultop, imcmp = imcmp)
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if(srcgroup.order() != len(tdict.keys())): # basic check
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raise ValueError('The supplied "generators" failed to generate the preimage group: ',
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srcgroup.order(), " != ", len(tdict.keys()))
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return tdict
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epsilon = np.eye(2)
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alif = np.array(((-1/2,-sqrt(3)/2),(sqrt(3)/2,-1/2)))
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bih = np.array(((-1/2,sqrt(3)/2),(-sqrt(3)/2,-1/2)))
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lam = np.array(((1,0),(0,-1)))
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mim = np.array(((-1/2,-sqrt(3)/2),(-sqrt(3)/2,1/2)))
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nun = np.array(((-1/2,sqrt(3)/2),(sqrt(3)/2,1/2)))
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# Group D3h
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# Note that the size argument of permutations is necessary, otherwise e.g. c*c and b*b would not be evaluated equal
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# N.B. the weird elements as Permutation(N) – it means identity permutation of size N+1.
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rot3_perm = Permutation(0,1,2, size=5) # C3 rotation
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xflip_perm = Permutation(0,2, size=5) # vertical mirror
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zflip_perm = Permutation(3,4, size=5) # horizontal mirror
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D3h_srcgens = [rot3_perm,xflip_perm,zflip_perm]
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D3h_permgroup = PermutationGroup(rot3_perm,xflip_perm,zflip_perm) # D3h
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#srcgens = [a,b,c]
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D3h_irreps = {
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# Bradley, Cracknell p. 61
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'E1' : generate_grouprep(D3h_permgroup, epsilon, D3h_srcgens, [alif, lam, epsilon], immultop = np.dot, imcmp = np.allclose),
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'E2' : generate_grouprep(D3h_permgroup, epsilon, D3h_srcgens, [alif, lam, -epsilon], immultop = np.dot, imcmp = np.allclose),
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# Bradley, Cracknell p. 59,
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'A1p' : generate_grouprep(D3h_permgroup, 1, D3h_srcgens, [1,1,1]),
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'A2p' : generate_grouprep(D3h_permgroup, 1, D3h_srcgens, [1,-1,1]),
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'A1pp' : generate_grouprep(D3h_permgroup, 1, D3h_srcgens, [1,1,-1]),
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'A2pp' : generate_grouprep(D3h_permgroup, 1, D3h_srcgens, [1,-1,-1]),
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}
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def mmult_tyty(a, b):
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return(qpms.apply_ndmatrix_left(a, b, (-4,-3)))
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def mmult_ptypty(a, b):
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return(qpms.apply_ndmatrix_left(a, b, (-6,-5,-4)))
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#TODO lepší název fce
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def gen_point_D3h_svwf_rep(lMax):
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my, ny = qpms.get_mn_y(lMax)
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nelem = len(my)
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C3_yy = qpms.WignerD_yy_fromvector(lMax, np.array([0,0,2*pi/3]))
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C3_tyty = np.moveaxis(np.eye(2)[:,:,ň,ň] * C3_yy, 2,1)
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zfl_tyty = qpms.zflip_tyty(lMax)
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yfl_tyty = qpms.yflip_tyty(lMax)
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xfl_tyty = qpms.xflip_tyty(lMax)
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I_tyty = np.moveaxis(np.eye(2)[:,:,ň,ň] * np.eye(nelem), 2,1)
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order = D3h_permgroup.order()
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sphrep_full = generate_grouprep(D3h_permgroup, I_tyty, D3h_srcgens, [C3_tyty, xfl_tyty, zfl_tyty],
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immultop = mmult_tyty, imcmp = np.allclose)
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sphreps = dict()
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for repkey, matrixrep in D3h_irreps.items():
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arepmatrix = matrixrep[rot3_perm] # just one of the matrices to get the shape etc
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if isinstance(arepmatrix, numbers.Number):
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dim = 1 # repre dimension
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preprocess = lambda x: np.array([[x]])
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elif isinstance(arepmatrix, np.ndarray):
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if(len(arepmatrix.shape)) != 2 or arepmatrix.shape[0] != arepmatrix.shape[1]:
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raise ValueError("Arrays representing irrep matrices must be of square shape")
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dim = arepmatrix.shape[0]
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preprocess = lambda x: x
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else:
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raise ValueError("Irrep is not a square array or number")
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sphrep = np.zeros((dim,dim,2,nelem,2,nelem), dtype=complex)
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for i in D3h_permgroup.elements:
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sphrep += preprocess(matrixrep[i]).conj().transpose()[:,:,ň,ň,ň,ň] * sphrep_full[i]
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sphrep *= dim / order
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# clean the nonexact values here
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for x in [0, 0.5, -0.5, 0.5j, -0.5j]:
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sphrep[np.isclose(sphrep,x)]=x
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sphreps[repkey] = sphrep
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return sphreps
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def gen_hexlattice_Kpoint_svwf_rep(lMax, psi):
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my, ny = qpms.get_mn_y(lMax)
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nelem = len(my)
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C3_yy = qpms.WignerD_yy_fromvector(lMax, np.array([0,0,2*pi/3]))
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C3_tyty = np.moveaxis(np.eye(2)[:,:,ň,ň] * C3_yy, 2,1)
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zfl_tyty = qpms.zflip_tyty(lMax)
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yfl_tyty = qpms.yflip_tyty(lMax)
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xfl_tyty = qpms.xflip_tyty(lMax)
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I_tyty = np.moveaxis(np.eye(2)[:,:,ň,ň] * np.eye(nelem), 2,1)
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hex_C3_K_ptypty = np.diag([exp(-psi*1j*2*pi/3),exp(+psi*1j*2*pi/3)])[:,ň,ň,:,ň,ň] * C3_tyty[ň,:,:,ň,:,:]
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hex_zfl_ptypty = np.eye(2)[:,ň,ň,:,ň,ň] * zfl_tyty[ň,:,:,ň,:,:]
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hex_xfl_ptypty = np.array([[0,1],[1,0]])[:,ň,ň,:,ň,ň] * xfl_tyty[ň,:,:,ň,:,:]
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hex_I_ptypty = np.eye((2*2*nelem)).reshape((2,2,nelem,2,2,nelem))
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order = D3h_permgroup.order()
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hex_K_sphrep_full = generate_grouprep(D3h_permgroup, hex_I_ptypty, D3h_srcgens, [hex_C3_K_ptypty, hex_xfl_ptypty, hex_zfl_ptypty],
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immultop = mmult_ptypty, imcmp = np.allclose)
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hex_K_sphreps = dict()
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for repkey, matrixrep in D3h_irreps.items():
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arepmatrix = matrixrep[rot3_perm] # just one of the matrices to get the shape etc
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if isinstance(arepmatrix, numbers.Number):
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dim = 1 # repre dimension
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preprocess = lambda x: np.array([[x]])
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elif isinstance(arepmatrix, np.ndarray):
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if(len(arepmatrix.shape)) != 2 or arepmatrix.shape[0] != arepmatrix.shape[1]:
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raise ValueError("Arrays representing irrep matrices must be of square shape")
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dim = arepmatrix.shape[0]
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preprocess = lambda x: x
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else:
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raise ValueError("Irrep is not a square array or number")
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sphrep = np.zeros((dim,dim,2,2,nelem,2,2,nelem), dtype=complex)
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for i in D3h_permgroup.elements:
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sphrep += preprocess(matrixrep[i]).conj().transpose()[:,:,ň,ň,ň,ň,ň,ň] * hex_K_sphrep_full[i]
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sphrep *= dim / order
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# clean the nonexact values here
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for x in [0, 0.5, -0.5, 0.5j, -0.5j]:
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sphrep[np.isclose(sphrep,x)]=x
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hex_K_sphreps[repkey] = sphrep
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return hex_K_sphreps
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def normalize(v):
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norm = np.linalg.norm(v.reshape((np.prod(v.shape),)), ord=2)
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if norm == 0:
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return v*np.nan
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return v / norm
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def gen_hexlattice_Kpoint_svwf_rep_projectors(lMax,psi):
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nelem = lMax * (lMax+2)
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projectors = dict()
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for repi, W in gen_hexlattice_Kpoint_svwf_rep(lMax,psi).items():
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totalvecs = 0
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tmplist = list()
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for p in (0,1):
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for t in (0,1):
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for y in range(nelem):
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for ai in range(W.shape[0]):
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for bi in range(W.shape[1]):
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v = np.zeros((2,2,nelem))
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v[p,t,y] = 1
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#v = np.ones((2,2,nelem))
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v1 = np.tensordot(W[ai,bi],v, axes = ([-3,-2,-1],[0,1,2]))
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if not np.allclose(v1,0):
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v1 = normalize(v1)
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for v2 in tmplist:
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dot = np.tensordot(v1.conjugate(),v2,axes = ([-3,-2,-1],[0,1,2]))
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if not np.allclose(dot,0):
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if not np.allclose(np.abs(dot),1):
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raise ValueError('You have to fix this piece of code.')# TODO maybe I should make sure that the absolute value is around 1
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break
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else:
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totalvecs += 1
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tmplist.append(v1)
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#for index, x in np.ndenumerate(v1):
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# if x!=0:
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# print(index, x)
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#print('----------')
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theprojector = np.zeros((2,2,nelem,2,2,nelem), dtype = float)
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for v in tmplist:
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theprojector += (v[:,:,:,ň,ň,ň] * v.conjugate()[ň,ň,ň,:,:,:]).real # TODO check is it possible to have imaginary elements?
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for x in [0, 1, -1,sqrt(0.5),-sqrt(0.5),0.5,-0.5]:
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theprojector[np.isclose(theprojector,x)]=x
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projectors[repi] = theprojector
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return projectors
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