Commit Graph

1148 Commits

Author SHA1 Message Date
Marek Nečada 210ddaa527 ScatteringSystem, ... definitions to pxd file 2021-12-08 14:09:15 +02:00
Marek Nečada c4d0700aca SSWF evaluation functions for debugging Ewald sum. 2021-12-08 14:09:15 +02:00
Marek Nečada 86d5245ea1 Additional phase factors in Ewald sum for debugging 2021-12-08 14:09:15 +02:00
Marek Nečada afda889a39 WIP documentation on phase/normalisation implementation. 2021-12-08 14:09:15 +02:00
Marek Nečada 8069634930 Ewald summation consistency test for lattice basis fields.
In-plane test currently passes, out-of-plane does not.
2021-12-08 14:09:15 +02:00
Marek Nečada a7c70344c5 finiterect-constant-driving more metadata output 2021-12-08 14:09:15 +02:00
Marek Nečada c0ade8cf2b Remove bugs of removed code from BUGS.rst.
Some of the other bugs might have been already fixed
as well, this has to be reviewed, and also doxygenised.
2021-12-08 14:09:15 +02:00
Marek Nečada fa6d93d3e8 Enable separation of long- and short-range of Ewald sum in python 2021-12-08 14:09:15 +02:00
Marek Nečada 7e390180cd Fix prange race conditions. 2021-12-08 14:09:15 +02:00
Marek Nečada 1158e116d2 "Basis fields" for finite systems.
There seem to be race conditions in the prange'd cython parts.
2021-12-08 14:09:15 +02:00
Marek Nečada 414bee6c9f "Basis fields" for finite systems 2021-12-08 14:09:15 +02:00
Kristian Arjas 24a6ea01d7 Include vlen in the solver (yet another regression from 087cd1c) 2021-09-21 09:59:26 +03:00
Kristian Arjas 50a5aa11a6 Add residual to solver (fix regression from 087cd1c) 2021-09-15 16:46:13 +03:00
Marek Nečada 572e15edbb Merge branch 'python_tmg': T-matrix generators from python functions 2021-08-23 08:42:50 +03:00
Marek Nečada b12fc991e5 Custom python T-matrix generator test. 2021-08-23 08:39:27 +03:00
Marek Nečada a5b137847a Custom python T-matrix generators 2021-08-22 09:01:16 +03:00
Marek Nečada 314cde1b99 BaseSpec "constructor" from C pointer. 2021-08-21 19:05:49 +03:00
Marek Nečada 80ee8b0d53 setup.py improvements
- resolve numpy header location using numpy.get_include()
- a hack to install cython, numpy before calling setup()
  (needed for cythonize() and get_include()) if necessary
- use named lists to reduce repetitions
- remove gslcblas from linker dependencies
- remove some old, commented out stuff
2021-08-08 08:02:06 +03:00
Marek Nečada 087cd1cab3 Merge branch 'beyn_pureblas'
Getting rid of gsl_matrix and gsl_cblas dependencies in the
implementation of Beyn's algorithm. This avoids header clashes between
gsl_cblas.h and cblas.h.
2021-06-11 11:12:42 +03:00
Marek Nečada 9d556e7b23 Remove all gsl_matrix_... related code in Beyn.
Now that pure BLAS implementation is working, this in no longer needed.

Getting rid of gsl_matrix and gsl_cblas eliminates header clashes between
GSL and other CBLAS implementations.
2021-06-11 11:11:17 +03:00
Marek Nečada f19c590d6e Pure BLAS Beyn: cleanup commented out GSL code 2021-06-11 11:11:17 +03:00
Marek Nečada 2be3521333 beyn pure BLAS: fix indices and strides
Also fix amos reference in CMakeLists
2021-06-11 11:11:17 +03:00
Marek Nečada 64f77557a7 [WIP;BROKEN] Getting rid of gsl linear algebra in Beyn.
Segfaults in LAPACKE_zgesdd.


Former-commit-id: 39ce2f70e214bfe2fba6f1ec2960139194dbc761
2021-06-11 11:11:17 +03:00
Marek Nečada 7e0d7639e8 Fix tests/CMakeLists amos reference 2021-06-09 13:28:18 +03:00
Marek Nečada 36c5d5236a Fix CQuat.from_rotvector() 2021-02-08 08:47:40 +02:00
Marek Nečada cf2aca7f03 Silent NAN (with warning) instead of crash for singular Bessel at zero 2020-11-17 10:57:16 +02:00
Marek Nečada 3479721455 Workaround for crashing spherical Bessel funcs at large distance.
This leads to loss of precision nevertheless, but it should
not be critical, especially if the main use is in far field patterns.
2020-09-02 12:15:26 +03:00
Marek Nečada 6189918348 finiterect-constants-driving always output the actual ccd_size 2020-09-02 09:30:23 +03:00
Marek Nečada 031397aacd finiterectlat-modes.py fix filename pattern 2020-08-03 17:58:50 +03:00
Marek Nečada 1a4b279eff Add D2h/D4h choice for square lattices in finiterectlat-modes.py 2020-08-03 14:50:33 +03:00
Marek Nečada 5285210489 Fix/update finiterectlat-modes.py 2020-08-03 14:36:06 +03:00
Marek Nečada ae62cf903d C99 standard compliance for static const initialisers. 2020-07-23 14:18:07 +03:00
Marek Nečada 5246229b2d Code reuse 2020-07-23 10:00:39 +03:00
Marek Nečada 868e603f1c Infinite periodic system scattered field "bases" 2020-07-23 07:23:47 +03:00
Marek Nečada bf297c11c3 Alternative approach in recursive "Delta" to avoid overflows. 2020-07-21 05:07:23 +03:00
Marek Nečada 9e42520371 Docstrings, array dtypes, fix _sswk "constructor" 2020-07-20 12:29:37 +03:00
Marek Nečada a68e1d8f8c Fix Ag Drude-Lorentz parameters also in the Python version. 2020-07-08 19:37:13 +03:00
Kristian Arjas a669e661e3 Fix Drude Parameters 2020-07-08 16:00:33 +03:00
Kristian Arjas d19a7813f7 Update gitignore 2020-07-08 15:58:42 +03:00
Marek Nečada 07c2f678b2 Fix finite <-> infinite error 2020-07-04 01:50:00 +03:00
Marek Nečada 38fca209ef Some features to enable ScatteringSystem reconstruction 2020-07-03 23:04:53 +03:00
Marek Nečada 24b5371e18 Remove erroneus "assert" 2020-07-03 20:08:49 +03:00
Marek Nečada 840744ec97 Provide access to more information in ScatteringSystem 2020-07-03 19:11:06 +03:00
Marek Nečada 38a4dbfcd7 Set compiler/linker options to make cython parallelisation actually work. 2020-07-03 15:10:15 +03:00
Marek Nečada 17824b062e Attempt to parallelize scattered_E cython methods. 2020-07-03 14:20:07 +03:00
Marek Nečada 1328077490 Ewald sum optimisation
Avoiding repeated cpow() calls yields more than 5x speedup
in the off-plane case.
2020-07-03 11:46:34 +03:00
Marek Nečada f7883a713b Docs: Add overview of CLI utilities; optimisation TODO 2020-07-02 22:49:12 +03:00
Marek Nečada 93118cfc07 [cleanup] Great purge of obsolete scripts
Some of the purged scripts might be desirable
to reimplement using the new API, especially
those related to hexagonal lattices.
2020-07-02 22:29:39 +03:00
Marek Nečada fc27320988 [cleanup] Remove obsolete CLI scripts 2020-06-30 19:29:14 +03:00
Marek Nečada 676240cf0d Update MathJax CDN address. 2020-06-29 12:36:07 +03:00